Fulltext search in archive

This study has evaluated the genetic characteristics and wheat processing-related properties of four Korean wheat landraces (KWLs). The KWLs were found to possess the vernalization alleles vrn-A1, vrn-B1, and Vrn-D1 and the photoperiod alleles Ppd-A1b, Ppd-B1b, and Ppd-D1a. The Korean cultivated variety Keumgang also shared these alleles with the exception of vrn-D1. With regard to grain hardness, KWL 2 was shown to possess Pina-D1a and Pinb-D1b like Keumgang, while other KWLs were classified as carrying Pina-D1a and Pinb-D1a. All KWLs were found to be non-waxy, carrying the alleles Wx-A1a, Wx-B1a, and Wx-D1a. With regard to the polyphenol oxidase (PPO) genes, all four KWLs carried low-activity alleles, in contrast to the Keumgang sample. The assessment of physicochemical properties revealed that KWL 1, 3, and 4 had a higher amylose content but a lower protein content than KWL 2 and Keumgang. In tests of solvent retention capacity KWL 1 and KWL 2 exhibited the lowest and highest values, respectively, for all four solvents used in the tests. With regard to the dough properties, the results of Mixolab analysis indicated a faster starch gelatinisation in KWL1, while in KWL 2 a high water absorption and the longest dough development and stability times were found. KWL 3 and 4 exhibited similar dough behaviours. Principal component analysis of the four KWL lines revealed distinct clustering based on their physicochemical and dough-related traits.

Rapeseed (Brassica napus L.) is a major global oilseed crop and exhibits significant heterosis. The discovery and characterisation of novel male-sterile accessions remain fundamental for harnessing heterosis in rapeseed breeding. Previously, we developed a male sterile two-type line system 19F08AB in B. napus. In this study, anther abortion in 19F08A was characterised using the squash method. The inheritance of male sterility in 19F08A and its genetic relationship to reported male sterile accessions in rapeseed was investigated using classical genetic analysis and male-sterility-gene-specific molecular markers. Results indicated that male sterile flowers of 19F08A exhibit flat petals, reduced floral organs, short filaments, and completely degenerated stamens devoid of pollen. Pollen mother cells in 19F08A degenerated at the pre-meiotic stage and aborted completely at the tetrad stage, with no dyad or tetrad formation observed. This suggested that 19F08A represents a meiosis abnormality-type male sterility. Classical genetic and molecular marker analysis revealed that male-sterile plants 19F08A carry the genotype of pol (RfpRfpMsms), whereas fertile plants 19F08B possess pol (RfpRfpmsms). The effect of the pol cytoplasm was masked by the Rfp gene. Therefore, fertility in 19F08AB is controlled by a pair of nuclear genes (Ms/ms), with male sterility exhibiting dominance over fertility. The application prospects of this male-sterile accession are also discussed. These findings expand the pool of male-sterile resources available for B. napus hybrid breeding and contribute to plant male sterility theory.

The potato is a pivotal food crop on a global scale. Nitrate reductase (NR) and nitrite reductase (NiR) are the key enzymes in nitrogen assimilation. In previous research, we found that the nitrogen assimilation process was effectively regulated by StNR and StNiRs in potato and that there were significant differences in nitrogen utilisation efficiency between different potato varieties. In this study, three potato variants with different nitrogen use efficiency (NUE) were subjected to various nitrogen supply levels and photoperiod treatments. The results indicated that the relative expression levels of StNR and StNiRs in their leaves and roots, along with the enzyme activity of NR and NiR, were proportional to the nitrogen supply levels and photoperiod. This study further clarified the expression patterns of StNR and StNiRs, as well as the enzyme activity changes of NR and NiR in leaves and roots under different nitrogen supply levels and different photoperiod treatments. This provides a theoretical basis for further in-depth exploration of the specific functions related to nitrogen absorption and assimilation efficiency in potato.

The present study investigates the differential protein expression levels between the frost-tolerant variety Qingda No.1 and the frost-sensitive variety Gannong No.9. The analysis was conducted using 4D-Label-free quantitative proteomics technology, with the samples collected prior to and after overwintering. The results showed that the protein expression of Qingda No.1 changed more significantly during the overwintering process, with 451 differentially expressed proteins (DEPs) being identified, of which 224 were up-regulated and 227 down-regulated. In contrast, the protein expression of Gannong No.9 differed from that of alfalfa roots of the frost-sensitive variety, with 204 DEPs being identified, of which 93 were up-regulated and 111 down-regulated. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis showed that the phenylpropanoid biosynthesis pathway was significantly enriched in both groups. Furthermore, enzymes such as phenylalanine ammonia-lyase (PAL), cinnamic acid 4-hydroxylase (C4H), and chalcone isomerase (CHI) were significantly up-regulated in the freezing-tolerant varieties. Protein interaction network analysis revealed the synergistic regulation mode of DEPs. The present study elucidated the metabolic adaptive mechanism of overwintering in alfalfa roots at the protein level, thus providing a theoretical basis for the selection and breeding of frost-tolerant varieties.

Solanum commersonii shows tolerance to low temperatures, a key target trait for potato breeding. Calcium-dependent protein kinases (CIPKs) play a significant role in plant defence response to several stresses, including cold. In this study, we observed the expression of ScCIPK1, ScCIPK3, ScCIPK23 and ScCIPK24 in S. commersonii exposed to 4 °C at multiple time intervals. Initial findings revealed that these genes were under-expressed after 10 and 30 minutes of cold stress, except ScCIPK3. Notably, after 24 hours, all genes displayed higher expression levels compared to the non-stressed controls. These findings highlight the role of ScCIPK3 in the early stages of cold response and indicate a coordinated regulatory mechanism across CIPKs that likely contributes to the cold stress tolerance observed in S. commersonii. In this work, we introduce a model to elucidate the signalling crosstalk under cold stress in S. commersonii, providing insights that could facilitate the development of cold-resistant potato cultivars.

Citrus sinensis (L.) Osbeck (sweet orange) is the most important cultivated citrus fruit in the world. However, Hanglongbing (HLB) disease, caused by Candidatus Liberibactor asiaticus (CLAs), poses a major threat to sweet orange production, by hindering colour, quality and export. Carotenoid cleavage oxygenases (CCOs), which include carotenoid cleavage dioxygenases (CCDs) and 9-cis-epoxycarotenoid dioxygenases (NCEDs), are essential for plant growth, development, and adaptation to phytohormonal, biotic, and abiotic stresses. This study identified 14 CsCCO genes in C. sinensis. Structural and conservation studies were conducted using gene structure and conserved domain analysis. Genomic localisation, gene duplication, and similarity among these genes were also examined. Gene ontology analysis predicted that CsCCOs could be involved in the carotene catabolic process. Analysis of cis-regulatory elements revealed that most CsCCO genes are involved in responses to stress, light signalling, and plant growth regulation. Genes in the 9-cis-epoxycarotenoid dioxygenase (NCED) subgroup are predominantly localised in chloroplasts, whereas genes in other subgroups are primarily found in the cytoplasm. All 13 of the CsCCOs genes identified were regulated by 25 microRNAs, indicating the crucial role of microRNAs in gene regulation in Citrus sinensis. The expression patterns of CsCCO genes in response to biotic and abiotic stress were studied. Transcriptome analysis demonstrated that CsNCED3 and CsNCED10 were up-regulated in response to HLB. This provides insight into the function of CCO genes in C. sinensis and identifies potential candidate genes for combating citrus greening.

This study examined the genetic variability, heritability, and genetic advance in the F₄ generation of sorghum to enhance grain productivity. The study was conducted at Citayam Research Station, Depok Indonesia (March–September 2023), and evaluated 102 progenies of the F₄ population from a Bioguma (a mutant line) × Gando Keta (a local variety) cross using an Augmented block design with four replications. The results of this experiment indicated that the F₄ generation outperformed the Gando Keta grain yield components, but remained inferior to Bioguma. The yield traits were influenced by the non-additive gene action, with genetic factors playing a significant role in grain weight variation. The top 20% of F₄ progenies exhibited improved yield characteristics, including thicker stems, larger panicles, and increased grain weight.

Retraction to: Czech J. Genet. Plant Breed., 58, 2022 (2): 73-82. https://doi.org/10.17221/93/2021-CJGPBThe article was retracted by the authors based on detected errors in the data processing.

It is with great sadness that we announce our respected colleague and prominent scientist, Assoc. Prof. RNDr. Jaroslava Ovesná, CSc., passed away on June 17, 2025, following a lengthy battle with an illness at the age of 65 years. She served as a member of the editorial board of the Czech Journal of Genetics and Plant Breeding from 2000 to 2017. From 1984, immediately after graduating in biochemistry from the Faculty of Science of Charles University, until her passing, she worked at the Czech Agrifood Research Centre (CARC), formerly the Crop Research Institute (CRI).

Transgenic organisms modified with ancestral genes for nitrogen metabolism are rare. Previously, it was reported that genetically modified Nicotiana tabacum with the ARO4 gene of aromatic amino acid synthesis from the yeast Debaryomyces hansenii increases its growth during moderate salt stress. In this investigation, it was explored if the changes in the expression of the gene DhARO4 in Nicotiana tabacum, during saline irrigation, are related to the chlorophyll content and the total reactive oxygen species production. Seedlings of transgenic and wild type Nicotiana tabacum germinated in standard conditions were divided into two irrigation groups, with 100 mM of NaCl and with tap water; and, after 50 days, in the non-senescent adult leaves of the plants, the total chlorophyll a and b and the total chlorophyll content were determined by spectrophotometry and the reactive oxygen species production (•OH, ¹O₂, H₂O₂) was quantified by a 2',7'-dichlorodihydrofluorescein assay. The expression of the DhARO4 gene was verified with a salt shock of 100 mM of NaCl for 24 hours in the transgenic and wild type plants in the tap water irrigation group. The DhARO4 gene transcript increased (P < 0.05) in the transgenic plant; meanwhile, the average concentration of chlorophyll a increased (P < 0.05), and the average production of reactive oxygen species decreased (P < 0.05).

This study investigated the genetic basis of days to heading (DTH) in tropical japonica rice using F₂ populations derived from late-maturing Rojolele and early-maturing Rojolele Srinuk varieties. Phenotypic analysis of DTH showed continuous distribution and positive skewness. Whole genome sequencing (WGS) derived single nucleotide polymorphism (SNP) from early and late-heading bulks were used to identify three candidate regions with strong association to DTH: qDTH3.1 and qDTH3.2 on chromosome 3, and qDTH7.1 on chromosome 7, with the latter linked to the Oryza sativa Pseudo-Response Regulator 37 (OsPRR37) gene. InDel markers validated qDTH7.1’s significant linkage to DTH, particularly marker ID14, which is effective for marker-assisted selection of early DTH in Rojolele background.

Sorghum as a C₄ crop has been shown to be both drought tolerant and photosynthetically productive. In this study, we demonstrated that sorghum SbSnRK1βγ2 (SbSNF4-2), the γ subunit of the sucrose non-fermenting 1 (SNF1)/SNF1-related protein kinase 1 (SnRK1) heterotrimeric complex, increased the plant height and biomass in Setaria viridis, a C4 relative of sorghum, but not in rice, a C3 relative, when overexpressed driven by the maize ubiquitin promoter. However, the overexpression did not increase the tiller number in S. viridis, although it caused modest increases in the tiller number in both sorghum and rice. In addition, SbSnRK1βγ2 did not affect the panicle weight in sorghum, but its overexpression doubled the panicle weight in S. viridis in all four evaluated transgenic lines. Overall, the overexpression of SbSnRK1βγ2 tripled the biomass production in S. viridis, indicating SbSnRK1βγ2’s potential in any future cellulosic biofuel production and S. viridis’ utility as an alternative genetic vehicle to functionally characterise sorghum genes.

Pattern recognition receptors (PRRs) play multiple roles in plants. As a kind of PRRs, chitin elicitor receptor kinase 1 (CERK1) proteins were reported to function in plant resistance to fungal and bacterial pathogens, and tolerance to salt stress. In this study, a predicted cowpea CERK1 homologous gene, designated as VuCERK1, was identified by database search. VuCERK1 protein contains 618 amino acid residues, with a predicted molecular mass of 67.5 kDa and a predicted isoelectric point of 5.04. VuCERK1 shows 58% and 60% sequence identity with AtCERK1 and OsCERK1, respectively. VuCERK1 also shows similar subcellular pattern with AtCERK1 and OsCERK1, suggesting VuCERK1 may function in cowpea immune responses. Gene expression assay indicated, that VuCERK1 was expressed in four different seedling tissues tested, comprising first leave, epicotyl, hypocotyl and root, and it could be induced by salt stress. Furthermore, transient expression of VuCERK1 in Nicotiana benthamiana induced obvious cell death. In addition, heterologous overexpression of VuCERK1 in Arabidopsis thaliana conferred enhanced disease resistance to Pseudomonas syringae pv. tomato strain DC3000 hrcC^- (Pto DC3000 hrcC^-).

Graphene-based materials (GBMs) have become potential soil pollutants due to their wide applications in agricultural environments. Although physiological mechanisms of plant responses to GBMs have been previously explored, the underlying molecular mechanisms remain unclear. In this paper, we analysed the physiological and transcriptomic changes of buckwheat (Fagopyrum spp.) roots exposed to 100 mg/L graphene oxide (GO) with different diameter. GO negatively affected root growth and higher diameters of GO caused more adverse effects on the root. In total 3 724 GO-responsive genes were identified in root by transcriptome analysis. 70 differentially expressed genes (DEGs) were involved in ROS detoxification, and 37 transporter-encoding genes were found to be involved in GO response. These transporters may regulate the uptake and transport of GO in buckwheat. The gene expression of 84 transcription factors (TFs) showed a response to GO stress in the root, which may regulate the transporters and reactive oxygen species (ROS) detoxification-related genes. Finally, the difference in the transcriptomic response of the root to the three GO materials with different diameters was investigated. 49 GO-responsive genes may be involved in the difference in the toxicity of GO with different diameters. This study provides new insights into the molecular mechanisms of plant roots to GBMs.

Yellow rust (YR), caused by Puccinia striiformis f.sp. tritici (Pst), is a global threat to wheat production. In this study the response of 46 wheat and triticale cultivars to Pst at the adult plant stage (APS) was evaluated during two successive growing seasons at Sulaimania, Iraq. Also, we used a molecular analysis to find the yellow rust resistance (Yr) genes present in the individual cultivars. The results revealed large differences in the response to Pst between the cultivars. Most of the cultivars were susceptible to YR; the mean coefficients of infection (CI) varied from 0.23 in cv. Sarah to 83.33 in Hsad. High resistance levels were found in Al-Wand, Kalar 1, Rezan, and Sarahat APS, while Al-Rashid, Charmo, Faris 1, Maaroof, Rabiea, and Iratom displayed moderate resistance. The level of Yellow rust infection was higher in 2023 than in 2022 in most tested cultivars. Molecular analysis revealed the highest number of Yr genes (Yr2, Yr5, Yr7, Yr9, Yrvav, Yr15, Yr24, Yr26, and Yr32) in the cv. Al-Wand, followed by Sulaimani 2 with eight Yr genes (Yr2, Yr5, Yr7, Yr9, Yr15, Yr24, Yr26, and Yr32). Only one Yr gene was found in Iratom and Tamuz 3. Yr2 was the most frequently identified gene, present in the majority of tested cultivars (87%), followed by Yr7 (76%) and Yr9 (74%), respectively.

Temperature is a key parameter that influences the uptake and subsequent utilization of nitrogen by plants. Both suboptimal and supraoptimal temperatures can impair nutrient uptake. The close relatives of bread wheat provide a possible source for breeders to increase stress tolerance. The effect of the increasing temperature (5, 10, 15, 20 and 30 °C) on nitrate uptake and metabolism in five modern spring cultivars of bread wheat (Triticum aestivum L.) and two cultivars of emmer wheat (Triticum dicoccon Schrank), was monitored. Wheat plants were grown under controlled conditions in hydroponics. The parameters of Michaelis-Menten kinetics, maximum uptake rate (V_max), the Michaelis constant (K_m) and selected characteristics of nitrate metabolism, the activity of nitrate reductase (NR) and contents of nitrate in leaves were observed. The effect of temperature was significant for all studied traits except K_m, while the cultivar factor was significant for V_max, K_m, NR and root/shoot ratio (R/S). Emmer wheat cultivar Rudico had significantly higher V_max at 5, 15, 20 and 30 °C than all bread wheat cultivars, on average 7.07, in comparison with 4.09–4.43 μmol NO₃^–/g FW/h in bread wheat cultivars. Emmer wheat Rudico and Tapiruz had significantly higher K_m (on average, 41.59 and 47.22 μM NO₃^–) than bread wheat cultivars (27.59–33.44 μM NO₃^–). Differences in the studied kinetic parameters of nitrate uptake offer the possibility of using T. dicoccon genotypes in breeding for better nitrogen use efficiency.

The Karakılçık landrace is known for its quality traits, especially protein content. However, its high plant height causes lodging and yield loss, which limits the production area. A Levante × Karakılçık population developed by crossing the local Karakılçık wheat with the commercial variety Levante in order to eliminate the disadvantages of Karakılçık and adapt it to wider production areas. In the study, yield, quality, and some physiological traits were investigated in the population. The experiment was conducted in an augmented experimental design in the cropping seasons of 2021–2022 and 2022–2023. A total of 36 genotypes from Levante × Karakılçık population, parents and 2 controls were tested. The tested genotypes varied significantly for all investigated traits (P < 0.01). Principal component biplot analysis explained 69.3% of the variations and relationships between the traits and genotypes. Among the investigated traits, genotypes LK26, LK19 and LK3 outperformed their parents in 5 traits (spike length (SL), number of spikelets per spike (SNS), number of grain numbers per spike (GNS), protein content (PC) and wet gluten content (G)), 4 traits (SNS, grain weight per spike (GWS), GNS and PC) and 3 traits (grain yield (GY), GNS and test weight (TW)), respectively. The genotype LK3 for yield and the genotypes LK19 and LK26 for quality traits could be recommended to growers and breeders.

For sustainable breeding in potato, a better understanding of genetic diversity within germplasm banks for sustainable breeding is needed. This study comprehensively characterised the molecular and phenotypic traits of 62 potato accessions, including advanced clones and indigenous potato varieties from Advanced Chemical Industries Limited (ACI Ltd.), Bangladesh, and 8 varieties from the Bangladesh Agricultural Research Institute (BARI). By using 9 SSR markers and 13 morphological traits, including both quantitative and qualitative traits, we observed correlation coefficients ranging from –0.3 to 0.7 for 8 quantitative traits, and Pearson's chi-square (χ² value) ranging from 24.3 to 135.4 for 5 qualitative characteristics. Molecular analyses identified 46 unique alleles, with 93.5% polymorphism. The markers STM0031 and STM1016 had the highest PIC value of 0.9. Genetic parameters for SSR markers included effective number of alleles per locus (Ne) = 5.6, unbiased expected heterozygosity (uh) = 0.8, diversity (h) = 0.8 and Shannon’s information index (I) = 1.8. Jaccard’s similarity coefficients ranged from 0.2 to 0.8, representing significant diversity. Cluster analysis, using unweighted pair-group method with arithmetic average (UPGMA), grouped the accessions into five clusters based on SSR profiles. An association was foud between the marker STM0031 and two traits: the number of tubers per hill and the content of reducing sugars in the tubers. This study provides information on genetic diversity and marker efficacy. It will guide future breeding programmes towards the development of high-yielding and industrially valuable potato varieties.

Methyl jasmonate (MeJA) accelerated floret opening in rice, crucial for addressing inconsistent floret opening in hybrid seed production of indica × japonica hybrids. However, indica and japonica rice exhibited notable differences in their sensitivity to MeJA’s impact on floret opening, with indica responding faster. To clarify the molecular basis of MeJA-induced floret opening sensitivity differences between indica and japonica rice, after 1 h of MeJA spraying, transcriptomes and endogenous floret opening regulators were compared between indica and japonica rice, with histology differences observed. The results showed that MeJA quickly activated plant hormones in indica and japonica rice, but JAZ genes in JA signalling pathway upregulation were greater in indica rice. Alpha-linolenic acid, starch and sucrose metabolism pathways responded faster in indica rice. MeJA boosted endogenous JA synthesis more in indica rice, which had 5–6 middle-layer cells, more than japonica’s 3–4 layers, resulting in thicker glumes. The metabolic pathways regulating floret opening, including plant hormone signal transduction, alpha-linolenic acid and starch and sucrose metabolism, along with endogenous JA and soluble sugars, could respond to exogenous MeJA. However, the more intense and rapid responses of these regulatory pathways and endogenous substances to MeJA in indica, resulted in the difference in sensitivity to MeJA between indica and japonica rice.

To investigate the role of the HvnAnt2 gene in the formation of different qingke barley grain colours, HvnAnt2 was isolated from the leaves of the White 91-97-3 (white), Blue qingke (blue), Kunlun 17 (black), and Purple qingke (purple). The HvnAnt2 gene encodes a hydrophilic unstable protein consisting of 561 amino acids, without a transmembrane structure and without a signal peptide, with one bHLH-MYC_N and one HLH domain at amino acids 22–204 and 387–436, respectively. The HvnAnt2 of qingke barley was most closely related to Hordeum vulgare and most distantly related to Triticum monococcum; it was mainly related to light responsiveness and methyl jasmonate responsiveness. The Ant2 gene was highly expressed in Kunlun 17 and Purple qingke barley grains during the later stage of development. The protein interaction prediction showed that flavonoid 3’-monooxygenase, anthocyanin biosynthesis gene regulators, and key enzymes in folate metabolism interacted with the Ant2 protein. This study provides a reference for further analysis of the Ant2 gene in the anthocyanin synthesis pathways of qingke barley with different grain colours.

Low temperatures are one of the major abiotic stresses that affect alfalfa’s development and yield. Enhancing frost resistance through resistance-related genes is one of the most effective ways to address this issue in alfalfa. Therefore, exploring cold-resistant gene resources and the cultivation of cold-resistant alfalfa cultivars is inevitable in order to achieve high yield and quality. In this study, we conducted transcriptome profiling of roots obtained from two alfalfa genotypes, i.e., Qingda No.1 for freeze tolerance and Gannong No.9 for freeze sensitivity. We observed that Qingda No.1 had more lateral roots and a more developed root system after overwintering, while Gannong No.9 had fewer lateral roots and an underdeveloped root system. After overwintering, Qingda No.1 exhibited higher superoxide dismutase (SOD) activity compared to Gannong No.9, while Gannong No.9 showed higher perosuperoxide dismutasexidase (POD) activity than Qingda No.1. We identified 25,935 differentially expressed genes, with 12 979 and 12 956 differential genes found in the freeze-tolerant variety Qingda No.1 group and the freeze-sensitive Gannong No.9 group, respectively. The enrichment of the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways also differed between the two groups. We also discovered several gene family members, and the most frequent transcription factors were bHLH, B3, NAC, WRKY, and MYB_related. These findings provide comprehensive information to further understand the molecular mechanisms of adaptation to freezing stress in alfalfa and offer potential functional candidate genes for adaptation to abiotic stress.

Sweet sorghum is a cereal crop that can potentially serve as a source for bioethanol production. This study aims to analyse the genetic diversity of promising genotypes of sweet sorghum at the molecular level. The genetic material consisted of 12 sweet sorghum genotypes. The genetic diversity estimated using 59 SSRs markers showed a polymorphism value of 0.48 and the coefficient of genetic diversity was classified as moderate. The unweighted pair group method arithmetic average (UPGMA) analysis assigned the tested genotypes into three major clusters with a similarity coefficient level of 0.596. This indicates that the genetic similarity of the tested genotypes is moderate to high. Eight unique loci were identified with the SSRs markers in six genotypes, which are considered to control high sugar traits.

Genetic diversity is referred to as any variation at the phenotypic, DNA or genomic level of an individual, population or species. The appraisal of diversity is important to understand its pattern and evolutionary relationships between germplasms or genotypes, which will aid in sampling the genetic resources in a more systematic manner for conservation and crop improvement. The present study employed 50 simple sequence repeat (SSR) markers linked to the yield and fibre quality/colour traits for estimating the genetic diversity in 33 cotton genotypes of diploid and tetraploid species differing in fibre colour. The diversity analysis was performed in GenAlEx (Ver. 6.41) and Powermarker (Ver. 3.25) while DARwin (Ver. 6.0.21) software was used to establish the phylogenetic relationships following neighbour-joining (NJ) and unweighted pair group method with arithmetic (UPGMA) mean method. Markers generated 186 polymorphic loci as genotypic data with an average of 3.72 alleles and an average polymorphic information content (PIC) value of 0.59 per SSR locus. The NJ and UPGMA grouped 33 genotypes into three major clusters I, II and III consisting of 21 tetraploid Gossypium hirsutum, 10 G. arboreum coloured and 2 white cotton genotypes, respectively. In the PCA, the first two components (PC1 and PC2) explained 74.69% of the variation and the biplot plotted the 33 genotypes in three groups. The study established the diverse nature of 33 cotton genotypes based on their fibre colour and ploidy level. With confirmation of the prevalent genetic diversity, we suggest that hybridisation can be planned among diverse genotypes to unleash greater variation in the fibre colour or to derive superior cross combinations.

The present study was to determine the genotypic and environmental variability and stability in seed yield, oil content, oil yield, oleic and linoleic acid of 10 safflower lines derived from a cross of Dinçer 5-18-1 × Montola 2000 together with six cultivars under six environments at five locations. The effects of genotypes, environments and genotype × environment interactions were highly significant (P < 0.01) for seed yield and oil content. Averaged across all environments, the seed yield was lowest in the cultivar Olas (2 352 kg/ha), and highest in the line Bay-Er 5 (2 869 kg/ha). According to mean (x_i) and regression coefficient (b_i) values, the Bay-Er 16 was better adapted to unfavourable environmental conditions, whereas the Bay-Er 1, Bay-Er 5 and Bay-Er 14 were better adapted to favourable environmental conditions. The highest oil content across environments, over 35%, was recorded in the line Bay-Er 15 and the cultivars Olas and Linas. The best adaptability to the environments was observed in the cultivar Olas. The oleic acid content of genotypes increased and the linoleic acid contents decreased from the north to the south latitudes. The oil content of genotypes grown in Southeastern Anatolia was higher than in the other regions. Within the regions, seed yield and oil content was higher after autumn sowing than after spring sowing.

Powdery mildew (PM) is a fungus that causes disease in both the field and the greenhouse. Utilizing resistant cultivars is the most effective approach of disease management. To develop insertion-deletion (InDel) markers associated to this trait, the whole genomes of the PM resistant line M17050 (P1) and the PM-susceptible line 28-1-1 (P2) were sequenced. A total of 1 200 InDels, with an average of 100 markers per chromosome, were arbitrarily chosen from the sequencing data for experimental validation. One hundred InDel markers were ultimately selected due to their informative genetic bands. Further, an F₂ segregating population of melons generated from these two parents was inoculated by the PM pathogen. Based on bulk segregant analysis (BSA) using these 100 InDel markers, the powdery mildew resistance was associated with the genomic region LVpm12.1 on the melon chromosome 12. This region overlapped the previously described quantitative trait locus (QTL)-hotspot area carrying multiple PM-resistance QTLs. Moreover, conventional QTL mapping analysis was done, which located LVpm12.1 in the region between 22.72 and 23.34 Mb, where three highly polymorphic InDel markers MInDel89, MInDel92, and MInDel93 were detected. Therefore, these markers could be used to track this resistance locus in melon while the lines carrying this locus could be employed in PM melon resistance breeding programs after validation tests.

Simple sequence repeat (SSR) markers are valuable genetic and genomic research tools and are extensively used in major crops. However, a paucity of available molecular markers in lentils (Lens culinaris Medik.) has significantly hindered genomic studies in this vital legume crop. In this study, we developed 33 new SSR markers for lentils using an enriched genomic library and tested their polymorphism in 10 lentil cultivars. We found that 16 (48.5%) SSR markers were polymorphic. The expected heterozygosity values of the polymorphic SSR markers ranged from 0.095 to 0.820, while observed heterozygosity values varied between 0.100 and 1.00. In addition, we tested the transferability of 86 SSR markers, including the 33 newly developed ones, to other legume species. Transferability rates of lentil SSR markers to other species varied between 13.76% (Vicia sativa L.) and 2.58% (Phaseolus vulgaris L. and Trifolium pratense L.). These new SSR markers could be used in further molecular breeding, population genetics, and genetic mapping studies in lentils and other legume species.

Fungal pathogens Plasmopara viticola (Berk. & M.A. Curtis) Berl. & De Toni (downy mildew) and Erysiphe necator Schwein. (powdery mildew) represent the biggest threats for grape growers worldwide. Under suitable conditions, these pathogens can spread very quickly through vineyards and cause significant damage. The most ecological way to reduce the possibility of infection in vineyards is growing interspecific genotypes which are able to suppress these pathogens and stop the spread of infection. With this in mind, 9 international and 11 Czech grapevine genotypes were analysed in order to genotype the resistance loci present in them. As a tool a set of SSR markers linked to known loci of resistance to downy and powdery mildew was used. Namely, presence of four loci responsible for resistance to Plasmopara viticola (Rpv3, Rpv4, Rpv7, and Rpv10) and two for Erysiphe necator (Ren3 and Ren9) loci were analysed with respective SSR markers. By this way the degree of resistance gene pyramiding was newly assessed in all analysed cultivars and their perspectives in grapevine breeding are discussed.

One of the main issues addressed by phytology in recent years has been plant tolerance mechanisms for abiotic stress. No combined analysis has been made to identify the genes involved in drought stress tolerance. The meta-analysis of microarray data related to drought stress was analysed by the R software packages and showed 3 029 upregulated genes and 3 017 downregulated genes. The upregulated genes were mostly related to the drought tolerance protein, abiotic stress response, and the Cys2His2 Zinc Finger Transcription Factor (C2H2 zinc finger TF). The downregulated genes were mainly related to the late embryogenesis abundant protein, abiotic stress response, and the basic leucine zipper (bZIP) TF. The common gene ontology (GO) terms in the upregulated and downregulated genes were mainly related to the metabolic process, response to stimulus, cellular metabolic process, and photorespiration. The up and down meta-differential expressed genes (meta-DEGs) mainly belonged to the those following Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways including: the biosynthesis of secondary metabolites, plant hormone signal transduction, mitogen-activated protein kinase (MAPK) signalling pathway, and RNA degradation. Moreover, in the upregulated and downregulated genes, the TFs with a high percentage mainly belonged to the Teosinte branched1/Cincinnata/proliferating cell factor (TCP), basic helix loop-helix (bHLH) and bZIP. Next, the hub upregulated genes were mainly related to the thiamine biosynthesis protein thiC, 4-hydroxyphenylpyruvate dioxygenase, ribose-5-phosphate isomerase precursor and heat shock protein. The hub downregulated genes were mainly associated with the elongation factor Ts, aldehyde dehydrogenase, and trigger factor. Finally, the data from the present meta-analysis were compared with previous studies on the qRT-PCR results and their up and down expressions were confirmed. Based on the findings of the current study, novel insights into the drought stress molecular response can be provided and various candidate genes can be introduced for barley drought stress tolerance breeding.

Orange-fleshed sweetpotato (OFSP) is a sustainable and inexpensive source of vitamin A that contributes to food and nutritional security in developing countries. Its adoption is low due to unconformity of the variety with community food culture, limited cultivar selection and breeding studies. The current study aimed at breeding of promising OFSP genotypes in Benin using three parental lines. Two hundred and seventy-four seeds and one hundred and six genotypes were obtained through biparental crosses of Tio-joe (imported orange-fleshed variety), Vobodouaho (local white-fleshed variety) and ACAB220 (local orange-fleshed variety). The phenotypic diversity of genotypes was assessed using 10 leaf characters and storage root flesh colour through multiple correspondence analysis and hierarchical cluster analysis. The results indicated cross-compatibility between Tio-joe and ACAB220 when ACAB220 was used as female. Reciprocal cross-compatibility was found between ACAB220 and Vobodouaho. The genotypes could be separated into two main populations and classified into five cluster groups. Promising intermediate and pale orange genotypes were obtained indicating possibilities to incorporate beta-carotene into the white background of the Vobodouaho variety through further backcrossing.