Czech J. Genet. Plant Breed., 2012, 48(2):61-73 | DOI: 10.17221/127/2011-CJGPB
Molecular analysis of temporal genetic structuring in pea (Pisum sativum L.) cultivars bred in the Czech Republic and in former Czechoslovakia since the mid-20th centuryOriginal Paper
- 1 Department of Plant Biology, Mendel University in Brno, Brno, Czech Republic
- 2 Department of Legumes and Technical Crops and
- Department of Plant Biotechnology, Agritec Plant Research, Ltd., Šumperk, Czech Republic
- 4 Department of Botany, Faculty of Sciences, Palacký University Olomouc, Olomouc, Czech Republic
Changes in genetic diversity of peas bred in the Czech Republic and in former Czechoslovakia since the mid-20th century were analysed using 38 molecular marker loci, including retrotransposons and microsatellites, differentiating a total of 84 alleles. Both marker types were comparably effective in revealing the genetic diversity, with a high correlation (r = 0.81), although the pairwise genetic distances of each marker type differed. In total, 175 accessions, selected from the Czech pea gene bank collection and representing the pea cultivars collected or bred in the country, were divided into three groups according to their date of sampling or variety registration. The first group contained 70 old cultivars and landraces collected prior to 1961. The second group contained 46 cultivars released from 1961 to 1980. The third group contained 59 cultivars released between 1981 and 2004. In spite of the decline in several diversity measures, differences in allele frequencies and even allele loss in three microsatellite loci were recorded over the 70-year period, while these differences between the groups were not statistically significant. In addition, genetic heterogeneity was detected in 29 accessions (15%). This indicates that although no genetic erosion could be observed since then, it is important to monitor the genetic diversity, furthermore it highlights the vital role of germplasm collections for the crop diversity conservation.
Keywords: gene bank; genetic diversity; germplasm; microsatellites; pea; retrotransposons
Published: June 30, 2012 Show citation
ACS | AIP | APA | ASA | Harvard | Chicago | Chicago Notes | IEEE | ISO690 | MLA | NLM | Turabian | Vancouver |
References
- Ambrose M.J. (1995): From Near East centre of origin the prized pea migrates throughout world. Diversity, 11: 118-119.
- Baur E. (1914): Die Bedeutung der primitiven Kulturrasen und der wilden Verwandten unserer Kulturpflanzen für die Pflanzenzüchtung. Jahrbuch der Deutschen Landwirtschaftsgeselschaft, 29: 104-109.
- Cieslarová J., Smýkal P., Dočkalová Z., Hanáček P., Procházka S., Hýbl M., Griga M. (2011a): Molecular evidence of genetic diversity changes in pea (Pisum sativum L.) germplasm after long-term maintenance. Genetic Resources and Crop Evolution, 58: 439-451.
Go to original source...
- Cieslarová J., Hanáček P., Fialová E., Hýbl M., Smýkal P. (2011b): Estimation of pea (Pisum sativum L.) microsatellite mutation rate based on pedigree and single-seed descent analyses. Journal of Applied Genetics, 52: 391-401.
Go to original source...
Go to PubMed...
- Ellis T.H.N. (2011): Pisum. In: Kole C. (ed.): Wild Crop Relatives: Genomic and Breeding Resources (Legume Crops and Forages). Springer Verlag, BerlinHeidelberg, 237-248.
Go to original source...
- Esquinas-Alcázar J. (2005): Protecting crop genetic diversity for food security: political, ethical and technical challenges. Nature Review in Genetics, 6: 946-953.
Go to original source...
Go to PubMed...
- Figliuolo G., Mazzeo M., Greco I. (2007): Temporal variation of diversity in Italian durum wheat germplasm. Genetic Resources and Crop Evolution, 54: 615-626.
Go to original source...
- Flavell A.J., Bolshakov V.N., Booth A., Jing R., Russell J., Ellis T.H.N., Isaac P. (2003): A microarray-based high throughput molecular marker genotyping method: The tagged microarray marker (TAM) approach. Nucleic Acids Research, 31: 1-8.
Go to original source...
Go to PubMed...
- Frankel O.H., Bennett E. (1970): Genetic Resources - Introduction. In: Frankel O.H., Bennett E. (eds): Genetic Resources in Plants - Their Exploration and Conservation. IPB Handbook No. 11. International Biological Programme, London, 7-18.
- Fu Y.B. (2006): Impact of plant breeding on genetic diversity of agricultural crops: Searching for molecular evidence. Plant Genetic Resources: Characterisation and Utilisation, 4: 71-78.
Go to original source...
- Fu Y.B., Peterson G.W., Scoles G., Rossnagel B., Schoen D.J., Richards K.W. (2003): Allelic diversity changes in 96 Canadian oat cultivars released from 1886 to 2001. Crop Science, 43: 1989-1995.
Go to original source...
- Glaszmann J.C., Kilian B., Upadhyaya H.D., Varshney R.K. (2010): Accessing genetic diversity for crop improvement. Current Opinion in Biology, 13: 167-173.
Go to original source...
Go to PubMed...
- Goudet J. (1995): FSTAT (Ver. 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86: 485-486.
Go to original source...
- Hammer K., Arrowsmith N., Gladis T.S. (2003): Agrobiodiversity with emphasis on plant genetic resources. Naturwissenschaften, 90: 241-250.
Go to original source...
Go to PubMed...
- Harlan J.R. (1975): Our vanishing genetic resources. Science, 188: 618-621.
Go to original source...
Go to PubMed...
- Hysing S.C., Sälla T., Nyboma H., Liljerotha E., Merkera A., Orforda S., Koebner R.M.D. (2008): Temporal diversity changes among 198 Nordic bread wheat landraces and cultivars detected by retrotransposon-based S-SAP analysis. Plant Genetic Resources: Characterization and Utilization, 6: 2-10.
Go to original source...
- Jing R., Knox M.R., Lee J.M., Vershinin A.V., Ambrose M., Ellis T.H.N., Flavell A.J. (2005): Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in Pisum species. Genetics, 171: 741-752.
Go to original source...
Go to PubMed...
- Jing R., Vershinin A., Grzebyta J., Shaw P., Smýkal P., Marshall D., Ambrose M.J., Ellis T.H.N., Flavell A.J. (2010): The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis. BMC Evolutionary Biology, 10: 44.
Go to original source...
Go to PubMed...
- Kalendar R., Flavell A.J., Ellis T.H.N., Sjakste T., Moisy C., Schulman A.H. (2011): Analysis of plant diversity with retrotransposon-based molecular markers. Heredity, 106: 520-530.
Go to original source...
Go to PubMed...
- Le Clerc V., Banzete F., Baril C., Guiard J., Zhang D. (2005): Assessing temporal changes in genetic diversity of maize varieties using microsatellite markers. Theoretical and Applied Genetics, 110: 294-302.
Go to original source...
Go to PubMed...
- Le Clerc V., Cadot V., Canadas M., Lallemand J., Guerin D., Boulineau F. (2006): Indicators to assess temporal genetic diversity in the French catalogue: no losses for maize and peas. Theoretical and Applied Genetics, 113: 1197-1209.
Go to original source...
Go to PubMed...
- Levene H. (1949): On a matching problem in genetics. The Annals of Mathematical Statistics, 20: 91-94.
Go to original source...
- Loridon K., Mcphee K., Morin J., Dubreuil P., Pilet- Nayel M.L., Aubert G., Rameau C., Baranger A., Coyne C., Lejeune-Henaut I., Burstin J. (2005): Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.). Theoretical and Applied Genetics, 111: 1022-1031.
Go to original source...
Go to PubMed...
- Malysheva-Otto L., Ganal M.W., Law J.R., Reeves J.C., Röder M.S. (2007): Temporal trends of genetic diversity in European barley cultivars (Hordeum vulgare L.). Molecular Breeding, 20: 309-322.
Go to original source...
- Mantel N. (1967): The detection of disease clustering and a generalized regression approach. Cancer Research, 27: 209-220.
- Nei M. (1978): Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89: 583-590.
Go to original source...
Go to PubMed...
- Perrier X., Jacquemoud-Collet J.P. (2006): DARwin software. Available at http://darwin.cirad.fr/darwin (accessed July 2011).
- Pistorius R. (1997): Scientists, Plants and Politics - A History of the Plant Genetic Resources Movement. International Plant Genetic Resources Institute, Rome.
- Proskowetz E. von (1890): Welches Werthverhaltniss besteht zwishen den Landrassen landwirthschaflicher Kutlurpflanzen und den sogenanneten Zuchtunsrassen ? In: Internationaler land- und forstwirstchaflicher Congress zu Wiena 1890. Section I: Landwirthschaft. Subsection: Pflanzenbau. Frage 5. Heft 13: 3-18
- Qi Y., Zhang D., Zhang H., Wang M., Sun J., Wei X., Qiu Z., Tang S., Cao Y., Wang X., Li Z. (2006): Genetic diversity of rice cultivars (Oryza sativa L.) in China and the temporal trends in recent fifty years. Chinese Science Bulletin, 51: 681-688.
Go to original source...
- Reif J.C., Hamrit S., Heckenberger M., Schipprack W., Maurer H.P., Bohn M., Melchinger A.E. (2005): Trends in genetic diversity among European maize cultivars and their par-ental components during the past 50 years. Theoretical and Applied Genetics, 111: 838-845.
Go to original source...
Go to PubMed...
- Reynolds J., Weir B.S., Cockerham C. (1983): Estimation of the coancestry coefficient: basis for a short- term genetic distance. Genetics, 105: 767-776.
Go to original source...
Go to PubMed...
- Rohlf F. (2006): NTSYSpc: Numerical Taxonomy System (Ver. 2.2). Exeter Publishing, Ltd., Setauket.
- Roussel V., Koenig J., Beckert M., Balfourier F. (2004): Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes. Theoretical and Applied Genetics, 108: 920-930.
Go to original source...
Go to PubMed...
- Roussel V., Leisova L., Exbrayat F., Stehno Z., Balfourier F. (2005): SSR allelic diversity changes in 480 European bread wheat varieties released from 1840 to 2000. Theoretical and Applied Genetics, 111: 162-170.
Go to original source...
Go to PubMed...
- Russell J.R., Ellis R.P., Thomas W.T.B., Waugh R., Provan J., Booth A., Fuller J., Lawrence P., Young G., Powell W. (2000): A retrospective analysis of spring barley germplasm development from 'foundation genotypes' to currently successful cultivars. Molecular Breeding, 6: 553-568.
Go to original source...
- Schindler F. (1890): Welches Werthverhaltniss besteht zwishen den Landrassen landwirthschaflicher Kutlurpflanzen und den sogenanneten Zuchtunsrassen ? In: Internationaler land- und forstwirstchaflicher Congress zu Wiena 1890. Section I: Landwirthschaft. Subsection: Pflanzenbau. Frage 5. Heft 13: 19-24.
- Smýkal P., Hýbl M., Corander J., Jarkovský J., Flavell A. J., Griga M. (2008): Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics, 117: 413-424.
Go to original source...
Go to PubMed...
- Smýkal P., Hýbl M., Flavell A.J., Corander J., Ambrose M.J. (2010): Towards comprehensive pea germplasm management for future use. [Final Report of AEGIS LOA10/048 Project.] Available at http://aegis.cgiar.org/aegis_grant_scheme/first_call.html
- Smýkal P., Kenicer G., Flavell A.J., Corander J., Kosterin O., Redden R.J., Ford R., Coyne C.J., Maxted N., Ambrose M.J., Ellis N.T.H. (2011): Phylogeny, phylogeography and genetic diversity of the Pisum genus. Plant Genetic Resources: Characterization and Utilization, 9: 4-18.
Go to original source...
- Van De Wouw M., Kik C., Van Hintum T., Van Treuren R., Visser B. (2009): Genetic erosion in crops: concept, research, results and challenges. Plant Genetic Resources: Characterization and Utilization, 8: 1-15.
Go to original source...
- Van De Wouw M., Van Hintum T., Kik C., Van Treuren R., Visser B. (2010): Genetic diversity trends in twentieth century crop cultivars: a meta analysis. Theoretical and Applied Genetics, 120: 1241-1252.
Go to original source...
Go to PubMed...
- Vavilov N.I. (1926): Studies on the origin of cultivated plants. Bulletin of Applied Botany 26. Leningrad.
- White J., Law J.R., MacKay I., Chalmers K.J., Smith J.S.C., Kilian A., Powell W. (2008): The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome. Theoretical and Applied Genetics, 116: 439-453.
Go to original source...
Go to PubMed...
- Yeh F.C., Boyle T.J.B. (1997): Population genetic analysis of co-dominant markers and quantitative traits. Belgian Journal of Botany, 129: 157.
This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.