Czech J. Genet. Plant Breed., 2007, 43(1):1-6 | DOI: 10.17221/1903-CJGPB
Proteome analysis in plant stress research: a review
- Department of Genetics and Plant Breeding, Crop Research Institute, Prague-Ruzyně, Czech Republic
Proteomic techniques that allow the identification and quantification of stress-related proteins, mapping of dynamics of their expression and posttranslational modifications represent an important approach in the research of plant stresses. In this review, we show an outline of proteomics methods and their applications in the research of plant resistance to various types of stresses.
Keywords: plant proteomics; mass spectrometry; two-dimensional gel electrophoresis
Published: March 31, 2007 Show citation
References
- Amme S., Matros A., Schlesier B., Mock H.P. (2006): Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. Journal of Experimental Botany, 57: 1537-1546.
Go to original source...
Go to PubMed... - Bae M.S., Cho E.J., Choi E.Y., Park O.K. (2003) Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant Journal, 36: 652-663.
Go to original source...
Go to PubMed... - Canovas F.M., Dumas-Gaudot E., Recorbet G., Jorrin J., Mock H.P., Rossignol M. (2004): Plant proteome analysis. Proteomics, 4: 285-298.
Go to original source...
Go to PubMed... - Caputo E., Moharram R., Martin B.M. (2003): Methods for on-chip protein analysis. Analytical Biochemistry, 321: 116-124.
Go to original source...
Go to PubMed... - Choi D.W., Zhu B., Close T.J. (1999): The barley (Hordeum vulgare L.) dehydrin multigene family: sequences, allele types, chromosome assignments, and expression characteristics of 11 Dhn genes of cv Dicktoo. Theoretical and Applied Genetics, 98: 1234-1247.
Go to original source... - Close T.J. (1997): Dehydrins: A commonality in the response of plants to dehydration and low temperature. Physiologia Plantarum, 100: 291-296.
Go to original source... - Close T.J., Meyer N.C., Radik J. (1995): Nucleotide-sequence of a gene encoding a 58.5-kilodalton barley dehydrin that lacks a serine tract. Plant Physiology, 107: 289-290.
Go to original source...
Go to PubMed... - Cooper B., Eckert D., Andon N.L., Yates J.R., Haynes P.A. (2003): Investigative proteomics: Identification of an unknown plant virus from infected plants using mass spectrometry. Journal of American Society of Mass Spectrometry, 14: 736-741.
Go to original source...
Go to PubMed... - Deng Z.X., Pang Y.Z., Kong W.W., Chen Z.H., Wang X.L., Liu X.J., Pi Y., Sun X.F., Tang K.X. (2005): A novel ABA-dependent dehydrin ERD10 gene from Brassica napus. DNA Sequence, 16: 28-35.
Go to original source...
Go to PubMed... - Elek G., Lapis K. (2006): A path or a new road in laboratory diagnostics? Biological mass spectrometry: Facts and perspectives. Pathology and Oncology Research, 12: 179-183.
Go to original source...
Go to PubMed... - Fowler S., Thomashow M.F. (2002): Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell, 14: 1675-1690.
Go to original source...
Go to PubMed... - Gevaert K., Goethals M., Martens L., Van Damme J., Staes A., Thomas G.R., Vandekerckhove J. (2003): Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nature Biotechnology, 21: 566-569.
Go to original source...
Go to PubMed... - Gevaert K., Van Damme P., Martens L., Vandekerckhove J. (2005): Diagonal reverse-phase chromatography applications in peptide-centric proteomics: Ahead of catalogue-omics? Analytical Biochemistry, 345: 18-29.
Go to original source...
Go to PubMed... - Ghesquiere B., Van Damme J., Martens L., Vandekerckhove J., Gevaert K. (2006): Proteome-wide characterization of N-glycosylation events by diagonal chromatography. Journal of Proteome Research, 5: 2438-2447.
Go to original source...
Go to PubMed... - Gulick P.J., Drouin S., Yu Z.H., Danyluk J., Poisson G., Monroy A.F., Sarhan F. (2005): Transcriptome comparison of winter and spring wheat responding to low temperature. Genome, 48: 913-923.
Go to original source...
Go to PubMed... - Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., Aebersold R. (1999): Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature Biotechnology, 17: 994-999.
Go to original source...
Go to PubMed... - Hajós G., Szabo E., Janaky T. (2004): Two-dimensional electrophoresis, MALDI-TOF MS and blotting for identification and characterisation of pathogenesis-related proteins in wheat cultivar. Chromatographia, 60: S257-S259.
Go to original source... - Hirano H., Islam N., Kawasaki H. (2004): Technical aspects of functional proteomics in plants. Phytochemistry, 65: 1487-1498.
Go to original source...
Go to PubMed... - Hoffmann-Sommergruber K. (2002): Pathogenesis-related (PR)-proteins identified as allergens. Biochemical Society Transactions, 30: 930-935.
Go to original source...
Go to PubMed... - Ideker T., Thorsson V., Ranish J.A., Christmas R., Buhler J., Eng J.K., Bumgarner R., Goodlett D.R., Aebersold R., Hood L. (2001): Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science, 292: 929-934.
Go to original source...
Go to PubMed... - Imin N., Kerim T., Rolfe B.G., Weinman J.J. (2004): Effect of early cold stress on the maturation of rice anthers. Proteomics, 4: 1873-1882.
Go to original source...
Go to PubMed... - Jones A.M.E., Bennett M.H., Mansfield J.W., Grant M. (2006): Analysis of the defence phosphoproteome of Arabidopsis thaliana using differential mass tagging. Proteomics, 6: 4155-4165.
Go to original source...
Go to PubMed... - Kawamura Y., Uemura M. (2003): Mass spectrometric approach for identifying putative plasma membrane proteins of Arabidopsis leaves associated with cold acclimation. Plant Journal, 36: 141-154.
Go to original source...
Go to PubMed... - Kirch H.H., van Berkel J., Glaczinski H., Salamini F., Gebhardt C. (1997): Structural organization, expression and promoter activity of a cold-stress-inducible gene of potato (Solanum tuberosum L). Plant Molecular Biology, 33: 897-909.
Go to original source...
Go to PubMed... - Kosová K., Vítámvás P., Prášil I.T. (2007): The role of dehydrins in plant response to cold. Biologia Plantarum. (accepted)
- Kuramitsu Y., Nakamura K. (2006): Proteomic analysis of cancer tissues: Shedding light on carcinogenesis and possible biomarkers. Proteomics, 6: 5650-5661.
Go to original source...
Go to PubMed... - Lang V., Palva E.T. (1992): The expression of a rab-related gene, rab18, is induced by abscisic-acid during the cold-acclimation process of Arabidopsis thaliana (L) Heynh. Plant Molecular Biology, 20: 951-962.
Go to original source...
Go to PubMed... - Mann M., Jensen O.N. (2003): Proteomic analysis of post-translational modifications. Natural Biotechnology, 21: 255-261.
Go to original source...
Go to PubMed... - Marra R., Ambrosino P., Carbone V., Vinale F., Woo S.L., Ruocco M., Ciliento R., Lanzuise S., Ferraioli S., Soriente I., Gigante S., Turra D., Fogliano V., Scala F., Lorito M. (2006): Study of the three-way interaction between Trichoderma atroviride, plant and fungal pathogens by using a proteomic approach. Current Genetics, 50: 307-321.
Go to original source...
Go to PubMed... - Martens L., Van Damme P., Van Damme J., Staes A., Timmerman E., Ghesquiere B., Thomas G.R., Vandekerckhove J., Gevaert K. (2005): The human platelet proteome mapped by peptide-centric proteomics: A functional protein profile. Proteomics, 5: 3193-3204.
Go to original source...
Go to PubMed... - McDonald W.H., Ohi R., Miyamoto D.T., Mitchison T.J., Yates J.R. (2002): Comparison of three directly coupled HPLC MS/MS strategies for identification of proteins from complex mixtures: single-dimension LC-MS/MS, 2-phase MudPIT, and 3-phase MudPIT. International Journal of Mass Spectrometry, 219: 245-251.
Go to original source... - Ndimba B.K., Chivasa S., Simon W.J., Slabas A.R. (2005): Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry. Proteomics, 5: 4185-4196.
Go to original source...
Go to PubMed... - O´Farrell P.H. (1975): High resolution two-dimensional electrophoresis of proteins. Journal of Biological Chemistry, 250: 4007-4021.
Go to original source... - Ong S.E., Blagoev B., Kratchmarova I., Kristensen D.B., Steen H., Pandey A., Mann M. (2002): Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular and Cellular Proteomics, 1: 376-386.
Go to original source...
Go to PubMed... - Pan S.Q., Carter C.J., Raikhel N.V. (2005): Understanding protein trafficking in plant cells through proteomics. Expert Review of Proteomics, 2: 781-792.
Go to original source...
Go to PubMed... - Renaut J., Lutts S., Hoffmann L., Hausman J.F. (2004): Responses of poplar to chilling temperatures: Proteomic and physiological aspects. Plant Biology, 6: 81-90.
Go to original source...
Go to PubMed... - Renaut J., Hausman J.F., Wisniewski M.E. (2006): Proteomics and low-temperature studies: bridging the gap between gene expression and metabolism. Physiologia Plantarum, 126: 97-109.
Go to original source... - Rossignol M., Peltier J.B., Mock H.P., Matros A., Maldonado A.M., Jorrin J.V. (2006): Plant proteome analysis: A 2004-2006 update. Proteomics, 6: 5529-5548.
Go to original source...
Go to PubMed... - Schagger H., von Jagow G. (1991): Blue native electrophoresis for isolation of membrane-protein complexes in enzymatically active form. Analytical Biochemistry, 199: 223-231.
Go to original source...
Go to PubMed... - Schweppe R.E., Haydon C.E., Lewis T.S., Resing K.A., Ahn N.G. (2003): The characterization of protein post-translational modifications by mass spectrometry. Accounts of Chemical Research, 36: 453-461.
Go to original source...
Go to PubMed... - Seki M., Narusaka M., Yamaguchi-Shinozaki K., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. (2001): Arabidopsis encyclopaedia using full-length cDNAs and its application. Plant Physiology and Biochemistry, 39: 211-220.
Go to original source... - Stroher E., Dietz K.J. (2006): Concepts and approaches towards understanding the cellular redox proteome. Plant Biology, 8: 407-418.
Go to original source...
Go to PubMed... - Taylor N.L., Heazlewood J.L., Day D.A., Millar A.H. (2005): Differential impact of environmental stresses on the pea mitochondrial proteome. Molecular and Cellular Proteomics, 4: 1122-1133.
Go to original source...
Go to PubMed... - Thiellement H., Zivy M., Plomion C. (2002): Combining proteomic and genetic studies in plants. Journal of Chromatography B, 782: 137-149.
Go to original source...
Go to PubMed... - Tonge R., Shaw J., Middleton B., Rowlinson R., Rayner S., Young J., Pognan F., Hawkins E., Currie I., Davison M. (2001): Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics, 1: 377-396.
Go to original source...
Go to PubMed... - Vagujfalvi A., Crosatti C., Galiba G., Dubcovsky J., Cattivelli L. (2000): Two loci on wheat chromosome 5A regulate the differential cold-dependent expression of the cor14b gene in frost-tolerant and frost-sensitive genotypes. Molecular and General Genetics, 263: 194-200.
Go to original source...
Go to PubMed... - Vítámvás P., Saalbach G., Prášil I. T., Čapková V., Opatrná J., Jahoor A. (2007): WCS120 protein family and proteins soluble upon boiling in cold-acclimated winter wheat. Journal of Plant Physiology. (in press)
Go to original source...
Go to PubMed... - Wang Y.J., Zhang Z.G., He X.J., Zhou H.L., Wen Y.X., Dai J.X., Zhang J.S., Chen S.Y. (2003): A rice transcription factor OsbHLH1 is involved in cold stress response. Theoretical and Applied Genetics, 107: 1402-1409.
Go to original source...
Go to PubMed... - Welling A., Rinne P., Vihera-Aarnio A., Kontunen-Soppela S., Heino P., Palva E.T. (2004): Photoperiod and temperature differentially regulate the expression of two dehydrin genes during overwintering of birch (Betula pubescens Ehrh.). Journal of Experimental Botany, 55: 507-516.
Go to original source...
Go to PubMed... - Zhu H., Bilgin M., Bangham R., Hall D., Casamayor A., Bertone P., Lan N., Jansen R., Bidlingmaier S., Houfek T., Mitchell T., Miller P., Dean R.A., Gerstein M., Snyder M. (2001): Global analysis of protein activities using proteome chips. Science, 293: 2101-2105.
Go to original source...
Go to PubMed...
This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.

