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One of the main issues addressed by phytology in recent years has been plant tolerance mechanisms for abiotic stress. No combined analysis has been made to identify the genes involved in drought stress tolerance. The meta-analysis of microarray data related to drought stress was analysed by the R software packages and showed 3 029 upregulated genes and 3 017 downregulated genes. The upregulated genes were mostly related to the drought tolerance protein, abiotic stress response, and the Cys2His2 Zinc Finger Transcription Factor (C2H2 zinc finger TF). The downregulated genes were mainly related to the late embryogenesis abundant protein, abiotic stress response, and the basic leucine zipper (bZIP) TF. The common gene ontology (GO) terms in the upregulated and downregulated genes were mainly related to the metabolic process, response to stimulus, cellular metabolic process, and photorespiration. The up and down meta-differential expressed genes (meta-DEGs) mainly belonged to the those following Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways including: the biosynthesis of secondary metabolites, plant hormone signal transduction, mitogen-activated protein kinase (MAPK) signalling pathway, and RNA degradation. Moreover, in the upregulated and downregulated genes, the TFs with a high percentage mainly belonged to the Teosinte branched1/Cincinnata/proliferating cell factor (TCP), basic helix loop-helix (bHLH) and bZIP. Next, the hub upregulated genes were mainly related to the thiamine biosynthesis protein thiC, 4-hydroxyphenylpyruvate dioxygenase, ribose-5-phosphate isomerase precursor and heat shock protein. The hub downregulated genes were mainly associated with the elongation factor Ts, aldehyde dehydrogenase, and trigger factor. Finally, the data from the present meta-analysis were compared with previous studies on the qRT-PCR results and their up and down expressions were confirmed. Based on the findings of the current study, novel insights into the drought stress molecular response can be provided and various candidate genes can be introduced for barley drought stress tolerance breeding.

Leaf rust caused by Puccinia triticina Eriks. (Pt) is one of the most devastating fungal pathogens affecting wheat (Triticum aestivum L.) production worldwide. Deployment of resistant cultivars is the most environmentally friendly approach to control the disease. In this study, thirty-seven wheat lines from the Hubei and Shaanxi provinces in China were evaluated for seedling resistance in the greenhouse using eighteen Pt races. These lines were also tested for slow rusting resistance in the field in the 2014 to 2018 growing seasons. Eleven molecular markers closely associated with known Lr genes were used as part of the postulation process. Seven known Lr genes, 1, 13, 18, 14a, 26, 34 and 46 either singly or in combination were postulated in twenty-five cultivars. Lr1 and Lr26 were the most commonly identified genes detected in thirteen and ten cultivars, respectively. Lr13 and Lr46 were each found in four and five cultivars. Lr34 was present in three cultivars. Lr18 and Lr14a were identified in cultivar Xi'nong 538. Six cultivars displayed slow rusting resistance in the field tests. The resistant cultivars identified in the present study can be used as resistance parents in crosses aimed at pyramiding and the deployment of leaf rust resistance genes in China.

In 2016-2018 virulence of the Czech wheat leaf rust population was studied on Thatcher near-isogenic lines, carrying different Lr genes, and 130 leaf rust isolates. Virulence to Lr9 was found only sporadically. Virulence frequency to Lr2a, Lr2b, Lr2c and Lr28 was lower than in previous years. All tested isolates were avirulent to Lr19. Lr24 conditioned resistance to majority of isolates. Nineteen recently registered Czech cultivars were tested with six isolates of the pathogen and Lr genes were postulated. Presence of genes Lr1, Lr10, Lr19, Lr24, Lr26, Lr28, Lr34 and Lr37 was tested by molecular markers. Lr37 prevailed, followed by Lr genes 10, 24, 28, 1 and 26; genes Lr19 and Lr34 were not determined.

For the wide adoption of soybean varieties, it is desirable, that they are Kunitz trypsin inhibitor (Kti) free and resistant to yellow mosaic disease (YMD). The soybean variety SL525 with YMD resistance was crossed with the YMD susceptible variety NRC101 with a null kti allele. The F₅ progeny derived from the cross was screened with two simple sequence repeat (SSR) markers (satt409 and satt322) linked with the null kti allele and the YMD resistance, respectively, and one null kti allele-specific marker. The presence of both desirable traits was further confirmed with the phenotypic data which showed good correlation with the genotypic data. The yield potential of fourteen such identified genotypes having both desirable traits was either at par or superior to SL525, hence, represent improved versions of SL 525.

The relationship between the early ground cover and the grain yield in winter wheat is not yet fully understood. In a winter wheat breeding programme, selection for early ground cover is traditionally made using visual scoring. Although visual scoring is preferred as a phenotypic screening tool by wheat breeders, its output may not be reliable, as it requires experience. A smartphone camera-based digital image technique can be recommended as a feasible, reliable, repeatable, affordable, and fast selection tool for early ground cover in wheat as an alternative to visual scoring. For this purpose, two wheat trials were conducted in the 2017-2018 and 2019-2020 seasons. In both seasons, 215 wheat genotypes in total, together with three checks from spring wheat, were tested under rain-fed conditions in the spring wheat zone in Turkey. All the tested wheat genotypes were grouped into spring, facultative, and winter growth habit using visual scoring. Simultaneously, photos were taken from each plot with a smartphone camera, and the early ground cover (%) was estimated using the smartphone camera-based digital image technique. The relationships between grain yield, visual scoring, and early ground cover could so be estimated. In both seasons, significant negative correlation between grain yield and visual scoring (r = -0.679** and r = -0.704**, respectively) and significant positive correlation between the grain yield and the early ground cover (r = 0.745** and r = 0.747**, respectively) were observed. The correlation between visual scoring and early ground cover were negative (r = -0.862** and r = -0.926**, respectively). The broad sense heritability estimates in both seasons were 0.51 and 0.85, respectively, for early ground cover, 0.91 and 0.94 for visual scoring, and 0.86 and 0.69 for grain yield. In this study, we revealed that testing winter wheat genotypes in the spring wheat zone rather than in the winter wheat zone could be a more effective way to unveil the positive relationship between the early ground cover and the grain yield. We have shown that the smartphone-based digital image technique is a useful selection tool for early ground cover in winter wheat.

The effective use of high-quality and high-yielding germplasm resources is of great importance for the development of hulless barley varieties. Therefore, the search for such resources has long been a goal of the breeding community. In this study, a genotyping-by-sequencing (GBS) analysis was performed on an F₂ (Nierumuzha × Kunlun 10) population. A high-density genetic map of hulless barley was constructed, which contained 1 475 efficient single-nucleotide polymorphism markers with 7 052 bin markers. The total length of the seven chromosomes was 1 139.4 cM, with an average marker distance of 0.59 cM. Based on this high-density linkage map, a total of 54 quantitative trait loci (QTLs) related to the seed traits were detected, including seed colour (SC), thousand kernel weight (TKW), seed average area (SAA), seed perimeter (SP), seed length (SL), seed width (SW), seed length/width (SLW), seed diameter (SD), and seed circular degree (SCD). These QTLs explained 3.32–35.73% (mean = 11.45%) of the phenotypic interpretation, including 24 main QTLs and 30 epistatic QTLs. A total of 24 candidate genes were identified within the QTL region, including one SC-associated transcription factor (ANT1), two TSW-related genes, a transcription factor (NAC021), a gene associated with the non-homologous end joining (NHEJ) pathway (ku70), three SAA-associated genes (LOL2, NAC021, TSK), two SL-associated genes (MADS21, MADS4), six SW-associated genes (FIP1, NAC021, DREB 1A, HVA22A, CYP78A6, SAUR71), five LW-related genes (NAM-B2, CRY1, LHY, CYP710A1, WRKY72), two SP-related genes (SKIP11, TCP18), two SD-related genes (NAC021, SKIP8), and three SCD-related genes (MYB1R1, RAX3, NAC100). These genes are involved in the regulation of the cell development, material transport, signal transduction, and plant morphogenesis and play an important role in the regulation of agronomic traits in hulless barley. The high-density genetic mapping and QTL identification of the seed traits in hulless barley provide a valuable genetic resource and the basis for further molecular marker-assisted selection and genomic studies.

The lignin content of forage crops significantly affects the livestock’s forage intake and its dry matter digestibility. The brown midrib (bmr) trait is known for its association with a reduced lignin content and increased digestibility. Pearl millet inbreds having the bmr trait were derived from two populations ICMV bmr and WRajPop bmr via continued selfing up to 6–8 generations. The results from the crosses revealed the presence of the same single recessive gene that controlled the bmr in both the populations. The stable expression of the bmr gene in the new genetic background indicated that there was no effect of modifier genes. Four inbreds were identified with the stable expression of bmr (three in ICMV 155 and one in the WRajPop background) with a high biomass potential, which can serve as a bmr source in future pearl millet forage breeding programmes.

The present study was conducted to explore the variability generated through recombination breeding for nine economically important traits in Indian mustard (Brassica juncea L. Czern & Coss.). Delineation of the inbred lines to different gene pools, based on genetic diversity, enables their utilisation in hybrid breeding. The unweighted pair group method with arithmetic mean (UPGMA) and a Euclidean distance matrix was used to delineate the inbred lines to clusters. The variability was studied using the range and coefficients of variation of the traits. Significant variability was observed for all studied traits except for oil content and days to maturity. 128 Indian mustard genotypes were grouped into four distinct gene pools based on genetic diversity. A set of 20 most diverse genotype combinations was produced. Promising inbred lines were identified and recommended as donors for the respective trait. The pedigree analysis of the inbred line groups revealed, that recombination breeding caused a large diversity as confirmed by the assignment of inbred lines with the same parentage to specific clusters.

Knowledge of the molecular mechanisms of response to environmental stress is fundamental for the development of genetically stress-tolerant crops. This study aims to find vegetable soybean accessions tolerant to cultivation in stressful tropical environments. Fourteen accessions of the vegetable soybean (Glycine max (L.) Merrill) were grown in mineral and beach ridges interspersed with swale (BRIS) soils. The genetic diversity, estimated using inter-simple sequence repeat (ISSR) markers, revealed 42.50% polymorphism and was regarded as moderate. The unweighted pair-group method arithmetic average (UPGMA) analysis allocated the tested accessions into five major clusters at a similarity coefficient level of 0.43. The lowest values of the genetic distance were between IIUMSOY11 and IIUMSOY13 & IIUMSOY13 and IIUMSOY14, indicating that these accessions were more genetically distant from the other accessions. Ten differentially expressed proteins were identified in the three selected accessions IIUMSOY1, IIUMSOY11 and IIUMSOY14 using mass spectrometry, revealing a unique expression of the proteins involved in the storage, flavonoid metabolism, protein modification, oxidative stress defence, carbohydrate metabolism and respiratory chain. The findings may be valuable for the selection of genetically diverse accessions, to enhance the breeding of vegetable soybean genotypes suitable for stressful tropical environments.

Sorghum is an important crop, and starch and phenolic compounds are major and important components in the sorghum grain. However, the underlying critical genetic elements contributing to the rich portfolio of nutrients in sorghum grains are largely unknown. Transcriptomic methods were employed to characterize the expression patterns at five different grain developmental stages of Hongyingzi (an important brewing sorghum), and another two grain sorghums, Jinuoliang 1 and Hongliangfeng 1, for comparison. The uniquely expressed genes were identified at each developmental stage of Hongyingzi when compared with the other two sorghum cultivars. The co-regulated genes at different developmental stages and the regulatory network were determined; the determinant genes and single-nucleotide polymorphisms located at the promoters of these genes involved in starch and phenolic compounds biosynthetic pathways were also identified. These results will provide insights into the potential regulatory network and further contribute to the clarification of the key determinant genes involved in the biosyntheses of starch and phenolic compounds. Meanwhile, some new transcripts and genes were identified at five different developmental stages of grains of the three sorghum cultivars. Our work can provide impetus for further study of the genes responsible for the biosynthesis of starch and phenolic compounds in the sorghum grain, and pave a way for functional validation of a batch of potential genes and single-nucleotide polymorphisms proposed in current work.

Blast disease caused by Pyricularia oryzae is one of the most destructive fungal diseases of rice in Malaysia. Utilisation of resistant varieties is the most efficient management approach towards reducing yield losses. The line IRTP21683 with the Pi9 gene has shown strong resistance against the isolate MPO988.3 of pathotype P_0.0, the most prevalent P. oryzae pathotype in Malaysia. Crossing of IRTP21683 was undertaken with the recurrent parent MR220, a susceptible elite Malaysian rice variety, using a marker assisted backcrossing technique with two simple sequence repeat markers, RM19776 and RM7311, as the tag for the Pi9 gene. Twenty BC₃F₄ lines with the Pi9 gene were resistant when challenged with MPO 988.3. The cluster analysis based on seven agronomic parameters showed that the resistant BC₃F₄ lines could be divided into four groups, of which the members in group 1 and 2 have shown comparable or better performance than MR220. Five lines in group 1, B220PI9-3-48, B220PI9-3-76, B220PI9-3-77, B220PI9-3-79 and B220PI9-3-82 showed outstanding yield performance with early maturation.

We investigated the phenotypic and genetic diversity among 25 grapevine accessions of white grape maintained in a germplasm collection ex situ. The selected varieties were characterised using standardised ampelographic descriptors and microsatellite markers to obtaintheir complete description. The ampelographic analysis based on 24 OIV descriptors and the obtained first dendrogram based on common features, revealed the extent of the phenotypic diversity ranging from 0.29 (between Coarnă albă and Chardonnay) to 0.92 (between Crâmpoşie and Cioinic), without any connection with their supposed origin or the current geographic area of distribution. The SSR allelic analysis with nine standard markers proved and confirmed its high discrimination potential for genotype identification and diversity. The second cluster analysis aimed to evaluate the genetic relationships among analysed accessions,based on Dice’s similarity coefficient, revealed two groups of varieties: the first group (A) included twelve accessions with a degree of similarity between 0.37 and 0.5. The second (B) included eleven accessions, with a similarity degree between 0.33 and 0.67. The genotypic cluster analysis showed a distinct lower similarity between the Majarcă albă variety and all the varieties from the first group, and between Busuioacă de Bohotin and all the analysed varieties. The phenotypic and genetic matrices and dendrograms, although not correlated, were complimentary and provided valuable information about the diversity of the grapevine genotypes and the identification of the synonyms.

Sustainable global wheat production requires wheat varieties, that are sufficiently resistant to the main wheat diseases. The economically important fungal pathogens worldwide include powdery mildew (PM), yellow rust (YR), leaf rust (LR) and blotch causing pathogens including Septoria nodorum blotch (SNB) and Septoria tritici blotch (STB). Here, we present the evaluation of winter wheat varieties of diverse origin against the prevalent local populations of PM, YR, LR, STB and SNB under natural infection conditions through image-based phenotyping in two consecutive years (2019 and 2020). We found several varieties to be resistant against multiple diseases. Following the association mapping, we obtained a total of 206 marker trait associations for all the parameters scored which were condensed to 79 quantitative trait loci (QTLs) (eight QTLs for PM, 25 QTLs for LR, 11 QTLs for YR, 19 QTLs for SNB and eight QTLs for STB) based on the linkage disequilibrium among the molecular markers. The known genes present at these QTLs are discussed in detail. The varieties resistant to multiple diseases, identified with the QTLs and molecular markers can be considered as elite raw material for future wheat breeding.

Knowledge of gene actions governing begomovirus resistance and plant architectural traits is a prerequisite for a successful hybrid breeding programme. Therefore, the gene actions associated with these traits were studied in two intervarietal crosses of Cucurbita moschata (C₁: Punjab Nawab × MVSR-6711 and C₂: Punjab Nawab × P-135). We used the generation mean analysis of six generations for this purpose. Significant differences between the generation means were observed for all the traits in both crosses. The parental lines differed significantly in most of the studied traits. The nature and magnitude of the gene effects of seventeen traits varied by trait and cross. A simple additive dominance model was adequate for the internode number, leaf length and width, petiole length, fruit weight and cavity diameter in C₁ and the number of fruits/plant in C₂. The non-allelic interaction was found to be significant for a majority of the traits including the per cent disease index of the squash leaf curl China virus, tomato leaf curl New Delhi virus and their mixed infections, which indicated, that recurrent selection in biparental progeny might be useful for the accumulation of genes with additive effects. Duplicate epistasis was observed for the vine, internodal and peduncle length in C₁ and the internode number, petiole and peduncle length, peduncle and fruit polar diameter in C₂. This information will help to establish a breeding program for the simultaneous improvement of virus resistance and yield traits in pumpkins.

Apples are available all year round since they can be stored for long time. However, the expression of the major apple allergen Mal d 1 can increase in the fruit during storage and incease so the risk of allergies in sensitive consumers. Therefore, we studied the change in the expression of the Mal d 1 gene during storage in the modern cultivar UEB 32642 (known under the brand name Opal^®) and the cultivar Gala Brookfield (cv. Gala) as a reference. The cultivars were stored under two different conditions, ultra-low oxygen (ULO) and standard cold conditions. The gene expression was evaluated both in fresh fruits and in fruits stored for four, six, and nine months. Nine isoforms of the gene Mal d 1 with the highest published expression were quantified using real-time PCR. The most expressed isoforms Mal d 1.01, Mal d 1.02 and Mal d 1.06A were found in the fresh and also in the stored fruits. The expression of the Mal d 1.03G and Mal d 1.06D isoforms was higher the sored fruits. Our study confirmed that (i) Opal^® had a lower overall expression of the Mal d 1 gene than cv. Gala, both in the fresh and stored fruits; (ii) standard cold storage is superior in preserving lower Mal d 1 levels in Opal^®apples compared to the ULO conditions; and (iii) less expressed isoforms may be responsible for the general increase in the Mal d 1 gene expression during storage.

To explore the role of WRKY transcription factors (TFs) in the resistance process of Qingke (Hordeum vulgare L. var. nudum Hook. f.), leaves of the leaf stripe disease-resistant variety Kunlun 14 and the susceptible variety Z1141 were sequenced by transcriptome sequencing (RNA-seq). A differentially expressed gene HvnWKRY1 was identified, and its disease-resistance function was preliminarily analysed. The result showed that the open reading frame (ORF) of the gene was 1 062 bp and encoded 354 amino acids. It contained the conserved WRKY domain (273–351) and belonged to the WRKY protein family. The phylogenetic tree results showed that HvWRKY1 was most closely related to Hordeum vulgare L. The WRKY family of Qingke, barley, maize and rice were divided into categories I, II, and III, among which HvWRKY1 was located in group III. Results of the quantitative real-time fluorescence PCR (qRT-PCR) showed that the expression of HvWRKY1 was significantly (P < 0.01) higher in leaf stripe infected leaves of Kunlun 14 than that of Z1141. In Arabidopsis thaliana transformed with HvWRKY1, resistance to Botrytis cinerea was enhanced. The RNA-seq analysis showed there were 824 differentially expressed genes (DEGs). Data of the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment indicated, that a plant-pathogen interaction pathway was enriched. This study is expected to provide a theoretical basis for further studies of functioning of  the Qingke gene HvWRKY1 in resistance to the leaf stripe disease.

Rabies remains an infectious disease among humans and animals, and requires the development of an effective vaccine essential to prevent rabies. Advances in molecular biology and biotechnology have led to the development and improvement of many rabies vaccines. Before the third-generation of the vaccine, rabies vaccines were based on the virus itself. Thus, even if effective, these vaccines may not be completely safe, resulting in a strong demand for the development of effective subunit vaccines that do not raise concerns about virus replication and infection in the host. This study investigated the ability of the glycoprotein of the rabies virus to be expressed in tobacco plants (Nicotiana benthamiana) and to induce an immune response in mice. Using a transient transfection, a soluble glycoprotein was successfully expressed in N. benthamiana. Fusing of five histidine residues at the C-terminus enabled the glycoprotein to be easily purified by affinity chromatography. The glycoprotein expressed in the plants was found to be N-glycosylated post-translationally, and the mice immunised with this glycoprotein generated neutralising antibodies against the rabies virus. These results suggest that a glycoprotein produced in the endoplasmic reticulum of N. benthamiana is bioactive, and might be used to generate a subunit vaccine against the rabies virus.

Cell wall digestibility is an important quality trait of modern silage maize cultivars. The symbiotic relationship between microbes and ruminant livestock enables the efficient upcycling of otherwise for human consumption unsuitable rumen digestible fibre or cell wall components into highly nutritious milk and meat. Before entering the Czech National List of Plant Varieties, new silage maize germplasm is extensively tested for different cell wall digestibility parameters. Recently published, the undigestible neutral detergent fibre (uNDF) cell wall digestibility approach promises even greater practical relevance. The aim of our study was, therefore, to assess the potential of the uNDF method, compared with current standard procedures, using a vast set of official Czech plant variety trial evaluations and Czech silage analyses from the 2018 cropping season. The uNDF method yielded a twice as high phenotypic standard deviation, compared with the current standard approaches. This is good news for plant breeders, official variety testing organisations, and farm professionals alike, enabeling faster variety improvement and simpler variety selection. On the other hand, due to the low differentiation potential, we discourage the use of the absolute lignin content when selecting for digestible silage maize varieties. Since between the digestibility traits enzymatic soluble organic substance (ELOS) and cellulase digestibility (DCS), a Pearson correlation close to one was observed, the substitution of one of these analytics by the uNDF method, may render valuable additional information in a highly economical manner.

Rice is one of the frontline cereals in the world and the major cultivated crop in Bangladesh. A total of eleven simple sequence repeats (SSRs) and thirteen sequence-tagged site (STS) markers were used to characterize twenty-four rice cultivars in Bangladesh. Twenty-four markers generated 60 alleles with 2.5 alleles per locus. The average polymorphism information content (PIC) value was 0.40, while the mean value of heterozygosity, gene diversity, and major allele frequency were recorded as 0.10, 0.48 and 0.62, respectively. However, the SSR markers showed more specificity and a higher discrimination power than the STS markers. The cluster analysis displayed four major clusters with a genetic similarity coefficient value of 0.73. The morphological analyses of the grain identified that Binadhan-20 and BRRI dhan34 had the longest and the shortest seed size, respectively, with a variable correlation between the seed length, width and length/width ratio. The phenol reaction test distinguished seven cultivars as japonica and seventeen cultivars as indica or an intermediate type. All these results regarding the phenotypic data and marker information will be useful for parental selection in modern rice breeding programmes.

Maize (Zea mays) is an economic crop suitable for use in phytoremediation in low to moderately cadmium (Cd)-contaminated soils due to its ability to accumulate high concentration of Cd in parts of maize that are not used in human diet. The aim of this study was to test Cd content in nine female parents of the commercial maize hybrids (C1 = ♀2-48; C2 = ♀1767/99; C3 = ♀87-24; C4 = ♀135-88, C5 = ♀84-28; C6 = ♀84-44; C7 = ♀438-95; C8 = ♀30-8; C9 = ♀B-73) grown under field conditions in two soils (B1: eutric cambisol, B2: stagnosol) during three growing seasons (A1: 2006, A2: 2007, A3: 2008). The stationary trial was conducted in four replicates. The ear-leaves at flowering and grain at maturity were taken for chemical analysis. The average quantities of leaf-Cd were 0.081, 0.088 and 0.143 mg per kg of dry matter for A1, A2 and A3, 0.089 and 0.118, for B1 and B2, respectively. Grain-Cd was below the threshold (< 0.02 mg/kg). Five Cd-inefficient genotypes (C3, C5, C6, C7 and C9) had low leaf-Cd (average 0.049 mg/kg), while this content was about 6-times higher (average 0.299 mg/kg) in Cd-efficient genotype C4. The yield among the years ranged from 2.36 to 4.31 t/ha. Maize grown on B2 had about 26% lower yield than on B1. Five genotypes (C1, C2, C8 and C9) achieved yields less than 3.50 t/ha (mean 3.15 t/ha), while in two genotypes (C3 and C5) yields were above 4.00 t/ha (mean 4.14 t/ha). Very strong correlations (r) of leaf-Cd status among years (ranged from 0.52 to 0.77) confirmed high genetic effect on the capability of Cd accumulation in maize. However, correlations between Cd content and yield were low (ranged from -0.17 to 0.06). Cd-efficient C4 female parent could be used for development of maize hybrids suitable for phytoremediation, while Cd-inefficient female parents for hybrids could be suitable as forage maize crop contributing to the lower Cd input into food chain.

The study is aimed at evaluating the pod shattering resistance of F₈ soybean lines based on the shattering incidence and shattering severity. The materials consist of fourteen F₈ soybean lines and two check cultivars. The pod shattering incidence was examined by using the oven-dry method, meanwhile, the shattering severity was evaluated based on the severity of the pod opening. The pod shattering resistance based on the shattering incidence resulted in five resistant lines (7-10% shattering), seven moderate lines (13-23% shattering), one susceptible line (53% shattering), and one very susceptible line (100% shattering). The pod shattering resistance based on the shattering severity showed that the pod opening on the ventral side differed between the lines and between the shattering degree, and it tends to form sigmoid curves with a different peak position for each shattering degree. The shattering severity of the resistant, moderate, and susceptible lines reached a peak at 60 °C, 50 °C, and 40 °C, respectively. A longer pod length indicated by the length of the dorsal (r = 0.827**) and ventral (r = 0.880**) sides of the pod, a higher total pod weight (0.827**), and a larger seed size (0.794**) will increase the degree of susceptibility to pod shattering. Those characteristics were considered to be the ones that should be used as the selection criteria in the breeding programme for pod shattering resistance in soybeans.

Genic male sterility (GMS) is one of the most important economic traits for cotton (Gossypium hirsutum L.) hybrid seed production. The GMS trait conferred by two recessive alleles ms5 and ms6 in homozygous constitution is widely used for cotton hybrid seed production in India. Identification of molecular markers closely linked to the ms5 and ms6 alleles would be useful in effective transferring in a short time male-sterility genes into cultivars or elite lines using marker-assisted backcrossing. Here, we describe a quick method to identify markers for GMS genes using bulk segregant analysis (BSA) in the interspecific (G. hirsutum × G. hirsutum) biparental population. The parents and bulks were genotyped with a cotton single nucleotide polymorphism (SNP) 63K array that contains 63 058 SNP markers including 45 104 intraspecific and 17 954 interspecific SNP markers. Four SNP markers were found to be linked with the Ms5 and Ms6 genes. The markers i23493Gh and i46470Gh linked with the Ms5 gene, and other two markers i08605Gh and i08573Gh linked with the Ms6 gene are located on chromosome 12 and 26, respectively. A simple and cost effective tetra-primer amplification refractory mutation system PCR (tetra-primer ARMS-PCR) assay was optimized for screening a large number of breeding samples with the identified SNP markers in a short time. The molecular markers developed in this study will facilitate the marker-assisted selection (MAS) and accelerate the development of new GMS lines to use in cotton hybrid seed production.

The Antisense 4CL gene was transfected into alfalfa through Agrobacterium-mediated transfer. The test results indicated that the antisense 4CL gene was successfully integrated into the genome DNA of alfalfa and was stably transmitted to the offspring. Compared to the wild-type plants, the lignin content of T₀ and T₁ generation plants was reduced by 45.77% and 31.97%, respectively; there were no significant differences in height and weight of T₀ and T₁ plants, compared to the wild-type plants. However, the transgenic plant differed from the wild-type plant by softer stems and leaves, larger leaves, fewer flowers and a fewer seeds. The T₀ line was susceptible to disease infection, but significantly improved in the second year. The results suggest that the 4CL gene from Amorpha fruticosa can be used to regulate lignin biosynthesis in transgenic forage crops.

To study the impact of parent-inbred lines on the heterosis expression of the agronomic characteristics in sunflower hybrids, 24 sunflower hybrids along with the parent lines were evaluated for their agronomic characteristics as a randomised complete block design with three replications in the 2018-2019 growing seasons in Karaj, Iran. According to the results, the hybrids R29 × A346, R19 × A346, R29 × A40 had the highest achene yield (4 159, 4 143 and 4 108 kg/ha, respectively), but the highest heterosis was observed in R29 × A212 and R19 × A212 (182 and 181%, respectively) suggesting that the incidence of heterosis is related to the relative performance of both the parents and hybrids. The results confirmed the heterosis expression for most of the agronomic traits. The heterosis for the days to flowering and maturity were negative. All the mid-parent heterosis (MPH) for the plant height, head diameter, stem diameter and achene number were positive, while only the plant height was positive for the best parent heterosis (BPH). Almost all the MPH and BPH of the crosses for the achene and oil yield were positive, which indicates a considerable heterosis for the achene and oil yield. The results showed that the relative impact of the restorer (R)-lines was higher than the cytoplasmic mail sterile (CMS)-lines on the heterosis expression for the days to maturity, stem diameter, achene number per head and achene and oil yield. The CMS-lines had more of an impact on the heterosis expression for the plant height and the relative impact of the R-lines and CMS-lines were almost similar for the days to flowering, head diameter, achene weight and oil content. Due to the higher relative impact of the paternal lines on the heterosis expression for half of the studied characteristics in this study, choosing suitable parental lines will have a crucial role in breeding the sunflowers for a desired trait.

Changes in the gene pool and homogeneity of red clover cultivars occur over time. Therefore, it is necessary to constantly renew the breeding material and foundation seed. Moreover, the market also prescribes a new demand. Based on the Natura 2000 habitats profile, we collected seeds from 39 locations across Lithuania in 2016. The phenotypic traits that affect the seed yield of red clover were analysed in 2018. The homogeneity of the populations with reference to the seed yield and 1 000 seed weight (TSW) were determined as well. Also, the possibility of obtaining two seed yields per season under drought conditions from wild genotypes of red clover was analysed. We found that the final seed yield mostly depends on the seed number per flower head (SN/FH), which strongly correlated with 1^st component of PCA during first (r = 0.91) and second (0.92) harvest. Meanwhile, the cluster analysis showed that the typical wild red clover has a lower seed weight than the cultivars and could be clustered on the basis of seed homogeneity. Finally, based on the seed phenotype and harvest components, there were five prospective accessions (2177, 2871, 2876, 2898 and 2899) for a new cultivar prototype.

Gene transformation can be done in direct and indirect (Agrobacterium-mediated) ways. The most efficient method of gene transformation to date is Agrobacterium-mediated method. The main problem of Agrobacterium-method is that some plant species and mutant lines are recalcitrant to regeneration. Requirements for sterile conditions for plant regeneration are another problem of Agrobacterium-mediated transformation. Development of genotype-independent gene transformation method is of great interest in many plants. Some tissue culture-independent Agrobacterium-mediated gene transformation methods are reported in individual plants and crops. Generally, these methods are called in planta gene transformation. In planta transformation methods are free from somaclonal variation and easier, quicker, and simpler than tissue culture-based transformation methods. Vacuum infiltration, injection of Agrobacterium culture to plant tissues, pollen-tube pathway, floral dip and floral spray are the main methods of in planta transformation. Each of these methods has its own advantages and disadvantages. Simplicity and reliability are the primary reasons for the popularity of the in planta methods. These methods are much quicker than regular tissue culture-based Agrobacterium-mediated gene transformation and success can be achieved by non-experts. In the present review, we highlight all methods of in planta transformation comparing them with regular tissue culture-based Agrobacterium-mediated transformation methods and then recently successful transformations using these methods are presented.

The following updates have been proposed for the XYZ system for the production of hybrid wheat: The waxy characteristics of the grain were used as a classifying mark. The candidate pollen sterility gene TIP2 was detected in silico based on similarity to known pollen sterility genes in rice. In order to maintain a sterile maternal component, the addition chromosome 7H was proposed, carrying wild-type alleles Waxy-H and TIP2-H. The concept of practical production of the commercial F₁ seed was designed.

Armeniaca cathayana, a new species described in 2010, belongs to gametophytic self-incompatibility (GSI) system which is under S-allele control. One new non-S-ribonuclease (non-S-RNase) was found in A. cathayana through comparing its nucleotide and amino acid sequences with sequences of the S-allele in Genbank. The BLAST analysis showed that the one new non-S-RNase S68-RNase (GenBank Accession No. MH155952) had the highest 96% nucleotide sequence homology with Prunus webbii non-S-RNase PW₁ (EU809938.1). Alignment of deduced amino acid sequences of A. cathayana S68-RNase shared 83% similarity with P. webbii PW₁. The new non-S-RNase determined in this study will provide new information to GSI of Rosaceae.

The present paper summarized some knowledge of modern technologies, applied in apple (Malus domestica) genome studies. New generation sequencing allowed single nucleotide polymorphism (SNP) chip technologies for genotyping, description of functional apple genes, characterization of the evolutionary results in apple genome fragment transition, as well as phylogenetic reconstruction of the genus Malus, being the confirmed progeny of M. sieviersii. Based on these technologies, newly developed putative markers may give the most important biological data such as age, geographical origins, tissue type determination, and external visible characters. The new generation genotyping platforms, representing very high efficiency, are now successfully applied for random apple genome-wide association (GWA) studies as well pedigree-based analysis and marker-assisted selection (MAS).

The harvest season of apricots is short and fruit cannot be protected in cold stores for a long time. For those reasons, apricot production and consumption are lower than in other fruit species. This study was conducted for the purpose of breeding new late ripening apricot varieties. To this aim, a total of 3718 hybrid genotypes of apricots were obtained from 42 crosses. Phenological, pomological and yield analyses were performed and variations of fruit development period, fruit size, polarimetric dry matter (Brix), total acidity, yield and other traits were determined. Two years of results for important traits are given for 12 promising genotypes. Fruit development period varied between 148 and 167 days, fruit weight 25.2 and 41.2 g, Brix 16.3 and 22.6% and total acidity 0.56 and 1.25%.